[Mulgara-svn] r1448 - in trunk: . jxdata/iTQL/fulltext_queries src/jar/resolver-lucene/java/org/mulgara/resolver/lucene
ronald at mulgara.org
ronald at mulgara.org
Wed Jan 21 12:45:05 UTC 2009
Author: ronald
Date: 2009-01-21 04:45:04 -0800 (Wed, 21 Jan 2009)
New Revision: 1448
Added:
trunk/jxdata/iTQL/fulltext_queries/exportData1.txt
trunk/jxdata/iTQL/fulltext_queries/exportResult1.txt
trunk/jxdata/iTQL/fulltext_queries/queryResult20.txt
trunk/jxdata/iTQL/fulltext_queries/queryResult21.txt
Modified:
trunk/jxdata/iTQL/fulltext_queries/test.jxu
trunk/log4j-conf.xml
trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndex.java
trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndexTuples.java
trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverFactory.java
trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverUnitTest.java
Log:
Added support for variables in the object position of the constraint when
querying lucene graphs. I.e. one can query now with
"... where $s <foo:title> $o in <lucene:graph>" or use a delete-select like
"delete select <foo:1> $p $o from <lucene:graph> where <foo:1> $p $o from
<lucene:graph>" to delete all entries for a given subject.
One of the implications of this is that lucene graphs may now be exported.
If a score is being requested, then a concrete value must still be supplied
for the object.
Added: trunk/jxdata/iTQL/fulltext_queries/exportData1.txt
===================================================================
--- trunk/jxdata/iTQL/fulltext_queries/exportData1.txt (rev 0)
+++ trunk/jxdata/iTQL/fulltext_queries/exportData1.txt 2009-01-21 12:45:04 UTC (rev 1448)
@@ -0,0 +1,430 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!DOCTYPE rdf:RDF [
+ <!ENTITY dc 'http://purl.org/dc/elements/1.1/'>
+ <!ENTITY rdfs 'http://www.w3.org/2000/01/rdf-schema#'>
+ <!ENTITY ns4 'urn:pmid:'>
+ <!ENTITY owl 'http://www.w3.org/2002/07/owl#'>
+ <!ENTITY rdf 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'>
+ <!ENTITY ns5 'http://mulgara.org/mulgara/Document#'>]>
+
+<rdf:RDF
+ xmlns:dc="&dc;"
+ xmlns:rdfs="&rdfs;"
+ xmlns:ns4="&ns4;"
+ xmlns:owl="&owl;"
+ xmlns:rdf="&rdf;"
+ xmlns:ns5="&ns5;">
+
+ <rdf:Description rdf:about="urn:pmid:10941725">
+ <ns5:title>Methylmercury accumulation in tissues and its effects on growth and appetite in captive great egrets.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941726">
+ <ns5:title>Histologic, neurologic, and immunologic effects of methylmercury in captive great egrets.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941727">
+ <ns5:title>The effect of dietary aflatoxin on wild turkey poults.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941728">
+ <ns5:title>Hematologic and serum chemistry values of the captive European wildcat.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941729">
+ <ns5:title>Evaluation of zuclopenthixol acetate to decrease handling stress in wapiti.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941730">
+ <ns5:title>Microbes in tree swallow semen.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941731">
+ <ns5:title>Validation of the fluorescence polarization assay and comparison to other serological assays for the detection of serum antibodies to Brucella abortus in bison.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941732">
+ <ns5:title>Safety and efficacy of Brucella abortus strain RB51 vaccine in captive pregnant elk.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941733">
+ <ns5:title>Safety of Brucella abortus strain RB51 in bull elk.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941734">
+ <ns5:title>Efficacy of a type C botulism vaccine in green-winged teal.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941735">
+ <ns5:title>Serologic and molecular evidence of Ehrlichia spp. in coyotes in California.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941736">
+ <ns5:title>Epizootic vesicular disease in captive California sea lions.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941737">
+ <ns5:title>A morbillivirus antibody survey of Atlantic walrus, narwhal and beluga in Canada.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941738">
+ <ns5:title>Antigenic, phenotypic and molecular characterization confirms Babesia odocoilei isolated from three cervids.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941739">
+ <ns5:title>Sylvatic trichinellosis in southwestern Spain.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941740">
+ <ns5:title>Use of a two-step Percoll gradient for separation of loggerhead sea turtle peripheral blood mononuclear cells.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941741">
+ <ns5:title>Blood plasma chemistries from wild mourning doves held in captivity.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941742">
+ <ns5:title>Immobilization of wild ocelots with tiletamine and zolazepam in southern Texas.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941743">
+ <ns5:title>Survival of Trichomonas gallinae in white-winged dove carcasses.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941744">
+ <ns5:title>Evaluation of host preferences by helminths and ectoparasites among black-tailed jackrabbits in northern California.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941745">
+ <ns5:title>Strigea falconispalumbi in Eurasian buzzards from Germany.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941746">
+ <ns5:title>Parelaphostrongyliasis in white-tailed deer in Missouri.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941747">
+ <ns5:title>Gastric intramural hematoma and hemoperitoneum in a captive northern fur seal.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941748">
+ <ns5:title>Sarcoma of possible nerve sheath origin in a captive muskrat.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941749">
+ <ns5:title>Absence of antibodies against canine distemper virus in free-ranging populations of the Eurasian badger in Great Britain.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941750">
+ <ns5:title>First report of myxomatosis in Mexico.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941751">
+ <ns5:title>Bovine virus diarrhea virus in free-living deer from Denmark.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941752">
+ <ns5:title>An epizootic of hemorrhagic disease in white-tailed deer in Missouri.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941753">
+ <ns5:title>Attempted transmission of Ehrlichia chaffeensis among white-tailed deer by Amblyomma maculatum.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:10941754">
+ <ns5:title>Brucellosis in ringed seals and harp seals from Canada. lforbes at em.agr.ca.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079685">
+ <ns5:title>The effect of different grain diets on fecal shedding of Escherichia coli O157:H7 by steers.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079686">
+ <ns5:title>Comparison of aqueous chemical treatments to eliminate Salmonella on alfalfa seeds.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079687">
+ <ns5:title>Enrichment procedures and plating media for isolation of Yersinia enterocolitica.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079688">
+ <ns5:title>Genotypes and enterotoxicity of Staphylococcus aureus isolated from the hands and nasal cavities of flight-catering employees.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079689">
+ <ns5:title>Stimulation of starter culture for further reduction of foodborne pathogens during salami fermentation.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079690">
+ <ns5:title>Bacillus cereus group strains, their hemolysin BL activity, and their detection in foods using a 16S RNA and hemolysin BL gene-targeted multiplex polymerase chain reaction system.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079691">
+ <ns5:title>Bacterial spore inhibition and inactivation in foods by pressure, chemical preservatives, and mild heat.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079692">
+ <ns5:title>Nonproteolytic Clostridium botulinum toxigenesis in cooked turkey stored under modified atmospheres.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079693">
+ <ns5:title>Detection of guaiacol produced by Alicyclobacillus acidoterrestris in apple juice by sensory and chromatographic analyses, and comparison with spore and vegetative cell populations.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079694">
+ <ns5:title>Aerobiology of a high-line speed cattle abattoir.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079695">
+ <ns5:title>The synergistic effect of excimer and low-pressure mercury lamps on the disinfection of flowing water.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079696">
+ <ns5:title>Ultraviolet spectrophotometric characterization and bactericidal properties of electrolyzed oxidizing water as influenced by amperage and pH.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079697">
+ <ns5:title>Prevalence of high-risk food consumption and food-handling practices among adults: a multistate survey, 1996 to 1997. The Foodnet Working Group.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079698">
+ <ns5:title>Influence of hygienic quality of raw materials on biogenic amine production during ripening and storage of dry fermented sausages.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079699">
+ <ns5:title>Formation of biogenic amines in raw milk Hispánico cheese manufactured with proteinases and different levels of starter culture.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079700">
+ <ns5:title>Mixed starter cultures to control biogenic amine production in dry fermented sausages.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079701">
+ <ns5:title>Detection of radiation-induced hydrocarbons and 2-alkylcyclobutanones in irradiated perilla seeds.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079702">
+ <ns5:title>A differential medium for the enumeration of the spoilage yeast Zygosaccharomyces bailii in wine.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079703">
+ <ns5:title>Norwalk-like virus sequences detected by reverse transcription-polymerase chain reaction in mineral waters imported into or bottled in Switzerland.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079704">
+ <ns5:title>Prevalence and characteristics of shiga toxin-producing Escherichia coli in beef cattle slaughtered on Prince Edward Island.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079705">
+ <ns5:title>Analysis and modeling of the variability associated with UV inactivation of Escherichia coli in apple cider.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079706">
+ <ns5:title>Yersinia enterocolitica biogroup 1A, serotype O:5 in chicken carcasses.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079707">
+ <ns5:title>Reduction of Campylobacter jejuni in a simulated chicken digestive tract by Lactobacilli cultures.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079708">
+ <ns5:title>Thermal stability of moniliformin at varying temperature, pH, and time in an aqueous environment.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11079709">
+ <ns5:title>Detection and analysis of animal materials in food and feed.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041128">
+ <ns5:title>A summary of reported foodborne disease incidents in Sweden, 1992 to 1997.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041129">
+ <ns5:title>Evaluation of safe food-handling instructions on raw meat and poultry products.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041130">
+ <ns5:title>Interventions for the reduction of Salmonella Typhimurium DT 104 and non-O157:H7 enterohemorrhagic Escherichia coli on beef surfaces.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041131">
+ <ns5:title>Protective effect of Enterococcus faecium J96, a potential probiotic strain, on chicks infected with Salmonella Pullorum.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041132">
+ <ns5:title>Surface application of lysozyme, nisin, and EDTA to inhibit spoilage and pathogenic bacteria on ham and bologna.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041133">
+ <ns5:title>Differentiation between types and strains of Clostridium botulinum by riboprinting.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041134">
+ <ns5:title>Influence of traditional brine washing of smear Taleggio cheese on the surface spreading of Listeria innocua.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041135">
+ <ns5:title>Antimicrobial effect of rosemary extracts.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041136">
+ <ns5:title>Effect of conjugated bile salts on antibiotic susceptibility of bile salt-tolerant Lactobacillus and Bifidobacterium isolates.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041137">
+ <ns5:title>Heat resistance of Alicyclobacillus acidocaldarius in water, various buffers, and orange juice.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041138">
+ <ns5:title>Extension of the shelf life of prawns (Penaeus japonicus) by vacuum packaging and high-pressure treatment.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041139">
+ <ns5:title>Visual color and doneness indicators and the incidence of premature brown color in beef patties cooked to four end point temperatures.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041140">
+ <ns5:title>The mycobiota of speck, a traditional Tyrolean smoked and cured ham.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041141">
+ <ns5:title>Comparison of capillary and test tube procedures for analysis of thermal inactivation kinetics of mold spores.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041142">
+ <ns5:title>Isolation of Cyclospora oocysts from fruits and vegetables using lectin-coated paramagnetic beads.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041143">
+ <ns5:title>Formation of heterocyclic amines in fried fish fiber during processing and storage.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041144">
+ <ns5:title>Detection, quantitation, and identification of residual aminopenicillins by high-performance liquid chromatography after fluorescamine derivation.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041145">
+ <ns5:title>Milkborne campylobacter infection in Hungary.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041146">
+ <ns5:title>Diminution of Campylobacter colonization in neonatal pigs reared off-sow.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041147">
+ <ns5:title>Comparison of the attachment of Escherichia coli O157:H7, Listeria monocytogenes, Salmonella typhimurium, and Pseudomonas fluorescens to lettuce leaves.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041148">
+ <ns5:title>Listeria monocytogenes contamination pattern in pig slaughterhouses.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041149">
+ <ns5:title>Improved detection of nontyphoid and typhoid Salmonellae with balanced agar formulations.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11041150">
+ <ns5:title>Comparison of different peptidase substrates for evaluation of microbial quality of aerobically stored meats.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252224">
+ <ns5:title>[Nikolaĭ Vladimirovich Timofeev-Resovskiĭ (1900-1981). (Essay on his life and works)]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130944">
+ <ns5:title>Theoretical foundation and experimental proof of the accumulating transfer of tritium from water into DNA and other biomolecules in vitro and in vivo.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252225">
+ <ns5:title>The A beta 6w302 gene and molecular mechanisms of resistance to the spread of radiation-induced lymphoma in a mouse mutant, survivor-27.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252226">
+ <ns5:title>[Study of genome instability using DNA fingerprinting of the offspring of male mice subjected to chronic low dose gamma irradiation]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252227">
+ <ns5:title>[Independence of DNA repair after gamma irradiation and radioadaptive response in lymphocytes of patients with Bloom syndrome]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252228">
+ <ns5:title>[Changes in the number of DNA-protein cross links in spleen lymphocytes of mice exposed to low intensity low dose gamma irradiation]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252229">
+ <ns5:title>[Radiation mapping as one of main methods of creating high resolution maps of human and animal genomes]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130945">
+ <ns5:title>Distinguishing potential sources of genotoxic exposure via HPRT mutations.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130946">
+ <ns5:title>Some aspects of the plant radioresistance.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252230">
+ <ns5:title>[Increased radiosensitivity after irradiation of lymphocytes low adaptive doses]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252231">
+ <ns5:title>[Results of and prospects for methods of determination of the frequency of mutant cells for glycophorin A and T-cell receptor loci to estimate long-term genotoxic effect of ionizing radiation]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252232">
+ <ns5:title>[Potential relationship between mutation process induced by low doses of ionizing radiation, and positional dynamics of chromosomes in nuclei of eukaryotic cells]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252233">
+ <ns5:title>[Genetic effects in Drosophila melanogaster induced by chronic low-dose irradiation]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130947">
+ <ns5:title>Biology versus engineering: the TMI accident as a case study in problems of dosimetry.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130948">
+ <ns5:title>Assessment of external dose to inhabitants evacuated from the 30-km zone soon after the Chernobyl accident.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252234">
+ <ns5:title>[Results of cytogenetic studies of the consequences of the Chernobyl accident]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252235">
+ <ns5:title>[Cytogenetic studies of blood lymphocytes of cosmonauts after long-ter, space flights]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252236">
+ <ns5:title>[Mutagenesis in Muridae from regions with increased radiation level]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252237">
+ <ns5:title>[Radiation-population monitoring of Pinus sylvestris L. in the zone of the Chernobyl power plant]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130949">
+ <ns5:title>Genomic instability, bystander effects and radiation risks: implications for development of protection strategies for man and the environment.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130950">
+ <ns5:title>Estimation of genetic risks of exposure to ionizing radiation: status in the year 2000.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11130951">
+ <ns5:title>Exposition of humans to low doses and low dose rate irradiation: an urgent need for new markers and new models.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11252238">
+ <ns5:title>[Current problems of estimation of genetic risk of human exposure to radiation]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076293">
+ <ns5:title>[Small cell carcinoma and carcinoids of the lung: morphology of apoptosis and expression of biomolecular markers of tumor growth]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076294">
+ <ns5:title>[Ultrastructural phenotypes of tumor cells of endocrine-cellular neoplasms of hepatopancreatoduodenal organs and their role in determining the degree of malignancy and prognosis of these diseases]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076295">
+ <ns5:title>[Morphofunctional characteristics of cellular and tissue components of the thyroid gland during its pathology]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076292">
+ <ns5:title>[The role of immunohistochemical methods for determining the type of treatment and prognosis of tumoral diseases]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076296">
+ <ns5:title>[Cytomorphological differentiation diagnosis and evaluation of p53mut, bcl-2, CD95 in peripheral B-cell small cell lymphomas]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076297">
+ <ns5:title>[Morphological manifestations of large cell anaplastic Ki1(CD30)-positive lymphoma in children]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076298">
+ <ns5:title>[Ultrastructure of the thymus after gamma irradiation during inhibition of steroidogenesis]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076299">
+ <ns5:title>[Algorithm of immunomorphological criteria of diagnosis of gastric mucosa dysplasias and early cancer in stomach biopsies]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076300">
+ <ns5:title>[Eccrine mucinous adenocarcinoma]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076301">
+ <ns5:title>[Malignant cylindroma]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076302">
+ <ns5:title>[Spitz's nevus: differential diagnosis with malignant skin melanoma]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076303">
+ <ns5:title>[Microphotography: some peculiarities of microphotography using black-and-white and color reversible films]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11076304">
+ <ns5:title>[Autopsy: problems and approaches to their solving]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244631">
+ <ns5:title>[Emergency hormonal contraception in France in 2000]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244632">
+ <ns5:title>[Postpartum hemorrhage: treatment by embolization]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244633">
+ <ns5:title>[Umbilical cutaneous metastasis (or Sister Mary Joseph's nodule) disclosing an ovarian adenocarcinoma]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244634">
+ <ns5:title>[Human papillomavirus typing in routine cervical smears. Results from a series of 3778 patients]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244635">
+ <ns5:title>[Fetal arrhythmias: diagnosis, prognosis, treatment; apropos of 33 cases]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244636">
+ <ns5:title>[Role of luteinizing hormone in follicular and corpus luteum physiology]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244637">
+ <ns5:title>[Effects of hormone replacement therapy for menopause on prognostic factors of breast cancer]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244638">
+ <ns5:title>[The First World War and venereal disease morbidity. I. The amplitude of the plague]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244639">
+ <ns5:title>[Analogues agonists and antagonists: what is their role outside of fertilization in vitro?]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244640">
+ <ns5:title>[Thin layer cytology of the cervix uteri]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244641">
+ <ns5:title>[Controversy: systemic amniocentesis for women 38 years and more? Is it still lawful to recommend amniocentesis with the sole criterion being maternal age of 38 years or more?]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11270348">
+ <ns5:title>[Controversy: systemic amniocentesis for women 38 years and more? Is it not premature to no longer accept performing amniocentesis on a patient age 38 years or more?]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11246480">
+ <ns5:title>Acceptance and digestibility of some selected browse feeds with varying tannin content as supplements in sheep nutrition in west Africa.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244860">
+ <ns5:title>Haematology and plasma biochemistry of Stamboek pre-pubertal gilts in Italy: reference values.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244861">
+ <ns5:title>Course of epidermal growth factor (EGF) and insulin-like growth factor I (IGF-I) in mammary secretions of the goat during end-pregnancy and early lactation.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244863">
+ <ns5:title>Evaluation of a transportable [Ca++] and pH analyser and of the impact of different anticoagulants and sampling sites in cattle.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244862">
+ <ns5:title>Differential electrocardiographic study on Iberica and Duroc breeds of pig during physical maturation.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244864">
+ <ns5:title>Production of reactive oxygen species in neutrophils after repeated bouts of exercise in standardbred trotters.</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244586">
+ <ns5:title>[Radiofrequency: storm looming over hepatic surgery]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244587">
+ <ns5:title>[Curative treatment of local and regional rectal cancer recurrences]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244588">
+ <ns5:title>[Proximal bile duct cholangiocarcinomas]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244589">
+ <ns5:title>[Cholelithiasis in heart transplant patients]</ns5:title>
+ </rdf:Description>
+ <rdf:Description rdf:about="urn:pmid:11244590">
+ <ns5:title>[Immediate postoperative complications after a laparoscopic partial posterior fundoplication. Early laparoscopic reoperation]</ns5:title>
+ </rdf:Description>
+</rdf:RDF>
Property changes on: trunk/jxdata/iTQL/fulltext_queries/exportData1.txt
___________________________________________________________________
Name: svn:keywords
+ Id HeadURL Revision
Name: svn:eol-style
+ native
Added: trunk/jxdata/iTQL/fulltext_queries/exportResult1.txt
===================================================================
--- trunk/jxdata/iTQL/fulltext_queries/exportResult1.txt (rev 0)
+++ trunk/jxdata/iTQL/fulltext_queries/exportResult1.txt 2009-01-21 12:45:04 UTC (rev 1448)
@@ -0,0 +1,2 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<answer xmlns="http://mulgara.org/tql#"><query><message>Successfully exported @server@#fulltext2 to @baseuri@/tmp/fulltext2.rdf.</message></query></answer>
Property changes on: trunk/jxdata/iTQL/fulltext_queries/exportResult1.txt
___________________________________________________________________
Name: svn:keywords
+ Id HeadURL Revision
Name: svn:eol-style
+ native
Added: trunk/jxdata/iTQL/fulltext_queries/queryResult20.txt
===================================================================
--- trunk/jxdata/iTQL/fulltext_queries/queryResult20.txt (rev 0)
+++ trunk/jxdata/iTQL/fulltext_queries/queryResult20.txt 2009-01-21 12:45:04 UTC (rev 1448)
@@ -0,0 +1,2 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<answer xmlns="http://mulgara.org/tql#"><query><variables><pred/><obj/></variables><solution><pred resource="http://mulgara.org/mulgara/Document#title"/><obj>Epizootic vesicular disease in captive California sea lions.</obj></solution></query></answer>
Property changes on: trunk/jxdata/iTQL/fulltext_queries/queryResult20.txt
___________________________________________________________________
Name: svn:keywords
+ Id HeadURL Revision
Name: svn:eol-style
+ native
Added: trunk/jxdata/iTQL/fulltext_queries/queryResult21.txt
===================================================================
--- trunk/jxdata/iTQL/fulltext_queries/queryResult21.txt (rev 0)
+++ trunk/jxdata/iTQL/fulltext_queries/queryResult21.txt 2009-01-21 12:45:04 UTC (rev 1448)
@@ -0,0 +1,2 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<answer xmlns="http://mulgara.org/tql#"><query><variables><subj/><obj/></variables><solution><subj resource="urn:pmid:10941725"/><obj>Methylmercury accumulation in tissues and its effects on growth and appetite in captive great egrets.</obj></solution><solution><subj resource="urn:pmid:10941726"/><obj>Histologic, neurologic, and immunologic effects of methylmercury in captive great egrets.</obj></solution><solution><subj resource="urn:pmid:10941727"/><obj>The effect of dietary aflatoxin on wild turkey poults.</obj></solution><solution><subj resource="urn:pmid:10941728"/><obj>Hematologic and serum chemistry values of the captive European wildcat.</obj></solution><solution><subj resource="urn:pmid:10941729"/><obj>Evaluation of zuclopenthixol acetate to decrease handling stress in wapiti.</obj></solution><solution><subj resource="urn:pmid:10941730"/><obj>Microbes in tree swallow semen.</obj></solution><solution><subj resource="urn:pmid:10941731"/><obj>Validation of the fluorescence polarization assay and comparison to other serological assays for the detection of serum antibodies to Brucella abortus in bison.</obj></solution><solution><subj resource="urn:pmid:10941732"/><obj>Safety and efficacy of Brucella abortus strain RB51 vaccine in captive pregnant elk.</obj></solution><solution><subj resource="urn:pmid:10941733"/><obj>Safety of Brucella abortus strain RB51 in bull elk.</obj></solution><solution><subj resource="urn:pmid:10941734"/><obj>Efficacy of a type C botulism vaccine in green-winged teal.</obj></solution><solution><subj resource="urn:pmid:10941735"/><obj>Serologic and molecular evidence of Ehrlichia spp. in coyotes in California.</obj></solution><solution><subj resource="urn:pmid:10941736"/><obj>Epizootic vesicular disease in captive California sea lions.</obj></solution><solution><subj resource="urn:pmid:10941737"/><obj>A morbillivirus antibody survey of Atlantic walrus, narwhal and beluga in Canada.</obj></solution><solution><subj resource="urn:pmid:10941738"/><obj>Antigenic, phenotypic and molecular characterization confirms Babesia odocoilei isolated from three cervids.</obj></solution><solution><subj resource="urn:pmid:10941739"/><obj>Sylvatic trichinellosis in southwestern Spain.</obj></solution><solution><subj resource="urn:pmid:10941740"/><obj>Use of a two-step Percoll gradient for separation of loggerhead sea turtle peripheral blood mononuclear cells.</obj></solution><solution><subj resource="urn:pmid:10941741"/><obj>Blood plasma chemistries from wild mourning doves held in captivity.</obj></solution><solution><subj resource="urn:pmid:10941742"/><obj>Immobilization of wild ocelots with tiletamine and zolazepam in southern Texas.</obj></solution><solution><subj resource="urn:pmid:10941743"/><obj>Survival of Trichomonas gallinae in white-winged dove carcasses.</obj></solution><solution><subj resource="urn:pmid:10941744"/><obj>Evaluation of host preferences by helminths and ectoparasites among black-tailed jackrabbits in northern California.</obj></solution><solution><subj resource="urn:pmid:10941745"/><obj>Strigea falconispalumbi in Eurasian buzzards from Germany.</obj></solution><solution><subj resource="urn:pmid:10941746"/><obj>Parelaphostrongyliasis in white-tailed deer in Missouri.</obj></solution><solution><subj resource="urn:pmid:10941747"/><obj>Gastric intramural hematoma and hemoperitoneum in a captive northern fur seal.</obj></solution><solution><subj resource="urn:pmid:10941748"/><obj>Sarcoma of possible nerve sheath origin in a captive muskrat.</obj></solution><solution><subj resource="urn:pmid:10941749"/><obj>Absence of antibodies against canine distemper virus in free-ranging populations of the Eurasian badger in Great Britain.</obj></solution><solution><subj resource="urn:pmid:10941750"/><obj>First report of myxomatosis in Mexico.</obj></solution><solution><subj resource="urn:pmid:10941751"/><obj>Bovine virus diarrhea virus in free-living deer from Denmark.</obj></solution><solution><subj resource="urn:pmid:10941752"/><obj>An epizootic of hemorrhagic disease in white-tailed deer in Missouri.</obj></solution><solution><subj resource="urn:pmid:10941753"/><obj>Attempted transmission of Ehrlichia chaffeensis among white-tailed deer by Amblyomma maculatum.</obj></solution><solution><subj resource="urn:pmid:10941754"/><obj>Brucellosis in ringed seals and harp seals from Canada. lforbes at em.agr.ca.</obj></solution><solution><subj resource="urn:pmid:11041128"/><obj>A summary of reported foodborne disease incidents in Sweden, 1992 to 1997.</obj></solution><solution><subj resource="urn:pmid:11041129"/><obj>Evaluation of safe food-handling instructions on raw meat and poultry products.</obj></solution><solution><subj resource="urn:pmid:11041130"/><obj>Interventions for the reduction of Salmonella Typhimurium DT 104 and non-O157:H7 enterohemorrhagic Escherichia coli on beef surfaces.</obj></solution><solution><subj resource="urn:pmid:11041131"/><obj>Protective effect of Enterococcus faecium J96, a potential probiotic strain, on chicks infected with Salmonella Pullorum.</obj></solution><solution><subj resource="urn:pmid:11041132"/><obj>Surface application of lysozyme, nisin, and EDTA to inhibit spoilage and pathogenic bacteria on ham and bologna.</obj></solution><solution><subj resource="urn:pmid:11041133"/><obj>Differentiation between types and strains of Clostridium botulinum by riboprinting.</obj></solution><solution><subj resource="urn:pmid:11041134"/><obj>Influence of traditional brine washing of smear Taleggio cheese on the surface spreading of Listeria innocua.</obj></solution><solution><subj resource="urn:pmid:11041135"/><obj>Antimicrobial effect of rosemary extracts.</obj></solution><solution><subj resource="urn:pmid:11041136"/><obj>Effect of conjugated bile salts on antibiotic susceptibility of bile salt-tolerant Lactobacillus and Bifidobacterium isolates.</obj></solution><solution><subj resource="urn:pmid:11041137"/><obj>Heat resistance of Alicyclobacillus acidocaldarius in water, various buffers, and orange juice.</obj></solution><solution><subj resource="urn:pmid:11041138"/><obj>Extension of the shelf life of prawns (Penaeus japonicus) by vacuum packaging and high-pressure treatment.</obj></solution><solution><subj resource="urn:pmid:11041139"/><obj>Visual color and doneness indicators and the incidence of premature brown color in beef patties cooked to four end point temperatures.</obj></solution><solution><subj resource="urn:pmid:11041140"/><obj>The mycobiota of speck, a traditional Tyrolean smoked and cured ham.</obj></solution><solution><subj resource="urn:pmid:11041141"/><obj>Comparison of capillary and test tube procedures for analysis of thermal inactivation kinetics of mold spores.</obj></solution><solution><subj resource="urn:pmid:11041142"/><obj>Isolation of Cyclospora oocysts from fruits and vegetables using lectin-coated paramagnetic beads.</obj></solution><solution><subj resource="urn:pmid:11041143"/><obj>Formation of heterocyclic amines in fried fish fiber during processing and storage.</obj></solution><solution><subj resource="urn:pmid:11041144"/><obj>Detection, quantitation, and identification of residual aminopenicillins by high-performance liquid chromatography after fluorescamine derivation.</obj></solution><solution><subj resource="urn:pmid:11041145"/><obj>Milkborne campylobacter infection in Hungary.</obj></solution><solution><subj resource="urn:pmid:11041146"/><obj>Diminution of Campylobacter colonization in neonatal pigs reared off-sow.</obj></solution><solution><subj resource="urn:pmid:11041147"/><obj>Comparison of the attachment of Escherichia coli O157:H7, Listeria monocytogenes, Salmonella typhimurium, and Pseudomonas fluorescens to lettuce leaves.</obj></solution><solution><subj resource="urn:pmid:11041148"/><obj>Listeria monocytogenes contamination pattern in pig slaughterhouses.</obj></solution><solution><subj resource="urn:pmid:11041149"/><obj>Improved detection of nontyphoid and typhoid Salmonellae with balanced agar formulations.</obj></solution><solution><subj resource="urn:pmid:11041150"/><obj>Comparison of different peptidase substrates for evaluation of microbial quality of aerobically stored meats.</obj></solution><solution><subj resource="urn:pmid:11076292"/><obj>[The role of immunohistochemical methods for determining the type of treatment and prognosis of tumoral diseases]</obj></solution><solution><subj resource="urn:pmid:11076293"/><obj>[Small cell carcinoma and carcinoids of the lung: morphology of apoptosis and expression of biomolecular markers of tumor growth]</obj></solution><solution><subj resource="urn:pmid:11076294"/><obj>[Ultrastructural phenotypes of tumor cells of endocrine-cellular neoplasms of hepatopancreatoduodenal organs and their role in determining the degree of malignancy and prognosis of these diseases]</obj></solution><solution><subj resource="urn:pmid:11076295"/><obj>[Morphofunctional characteristics of cellular and tissue components of the thyroid gland during its pathology]</obj></solution><solution><subj resource="urn:pmid:11076296"/><obj>[Cytomorphological differentiation diagnosis and evaluation of p53mut, bcl-2, CD95 in peripheral B-cell small cell lymphomas]</obj></solution><solution><subj resource="urn:pmid:11076297"/><obj>[Morphological manifestations of large cell anaplastic Ki1(CD30)-positive lymphoma in children]</obj></solution><solution><subj resource="urn:pmid:11076298"/><obj>[Ultrastructure of the thymus after gamma irradiation during inhibition of steroidogenesis]</obj></solution><solution><subj resource="urn:pmid:11076299"/><obj>[Algorithm of immunomorphological criteria of diagnosis of gastric mucosa dysplasias and early cancer in stomach biopsies]</obj></solution><solution><subj resource="urn:pmid:11076300"/><obj>[Eccrine mucinous adenocarcinoma]</obj></solution><solution><subj resource="urn:pmid:11076301"/><obj>[Malignant cylindroma]</obj></solution><solution><subj resource="urn:pmid:11076302"/><obj>[Spitz's nevus: differential diagnosis with malignant skin melanoma]</obj></solution><solution><subj resource="urn:pmid:11076303"/><obj>[Microphotography: some peculiarities of microphotography using black-and-white and color reversible films]</obj></solution><solution><subj resource="urn:pmid:11076304"/><obj>[Autopsy: problems and approaches to their solving]</obj></solution><solution><subj resource="urn:pmid:11079685"/><obj>The effect of different grain diets on fecal shedding of Escherichia coli O157:H7 by steers.</obj></solution><solution><subj resource="urn:pmid:11079686"/><obj>Comparison of aqueous chemical treatments to eliminate Salmonella on alfalfa seeds.</obj></solution><solution><subj resource="urn:pmid:11079687"/><obj>Enrichment procedures and plating media for isolation of Yersinia enterocolitica.</obj></solution><solution><subj resource="urn:pmid:11079688"/><obj>Genotypes and enterotoxicity of Staphylococcus aureus isolated from the hands and nasal cavities of flight-catering employees.</obj></solution><solution><subj resource="urn:pmid:11079689"/><obj>Stimulation of starter culture for further reduction of foodborne pathogens during salami fermentation.</obj></solution><solution><subj resource="urn:pmid:11079690"/><obj>Bacillus cereus group strains, their hemolysin BL activity, and their detection in foods using a 16S RNA and hemolysin BL gene-targeted multiplex polymerase chain reaction system.</obj></solution><solution><subj resource="urn:pmid:11079691"/><obj>Bacterial spore inhibition and inactivation in foods by pressure, chemical preservatives, and mild heat.</obj></solution><solution><subj resource="urn:pmid:11079692"/><obj>Nonproteolytic Clostridium botulinum toxigenesis in cooked turkey stored under modified atmospheres.</obj></solution><solution><subj resource="urn:pmid:11079693"/><obj>Detection of guaiacol produced by Alicyclobacillus acidoterrestris in apple juice by sensory and chromatographic analyses, and comparison with spore and vegetative cell populations.</obj></solution><solution><subj resource="urn:pmid:11079694"/><obj>Aerobiology of a high-line speed cattle abattoir.</obj></solution><solution><subj resource="urn:pmid:11079695"/><obj>The synergistic effect of excimer and low-pressure mercury lamps on the disinfection of flowing water.</obj></solution><solution><subj resource="urn:pmid:11079696"/><obj>Ultraviolet spectrophotometric characterization and bactericidal properties of electrolyzed oxidizing water as influenced by amperage and pH.</obj></solution><solution><subj resource="urn:pmid:11079697"/><obj>Prevalence of high-risk food consumption and food-handling practices among adults: a multistate survey, 1996 to 1997. The Foodnet Working Group.</obj></solution><solution><subj resource="urn:pmid:11079698"/><obj>Influence of hygienic quality of raw materials on biogenic amine production during ripening and storage of dry fermented sausages.</obj></solution><solution><subj resource="urn:pmid:11079699"/><obj>Formation of biogenic amines in raw milk Hispánico cheese manufactured with proteinases and different levels of starter culture.</obj></solution><solution><subj resource="urn:pmid:11079700"/><obj>Mixed starter cultures to control biogenic amine production in dry fermented sausages.</obj></solution><solution><subj resource="urn:pmid:11079701"/><obj>Detection of radiation-induced hydrocarbons and 2-alkylcyclobutanones in irradiated perilla seeds.</obj></solution><solution><subj resource="urn:pmid:11079702"/><obj>A differential medium for the enumeration of the spoilage yeast Zygosaccharomyces bailii in wine.</obj></solution><solution><subj resource="urn:pmid:11079703"/><obj>Norwalk-like virus sequences detected by reverse transcription-polymerase chain reaction in mineral waters imported into or bottled in Switzerland.</obj></solution><solution><subj resource="urn:pmid:11079704"/><obj>Prevalence and characteristics of shiga toxin-producing Escherichia coli in beef cattle slaughtered on Prince Edward Island.</obj></solution><solution><subj resource="urn:pmid:11079705"/><obj>Analysis and modeling of the variability associated with UV inactivation of Escherichia coli in apple cider.</obj></solution><solution><subj resource="urn:pmid:11079706"/><obj>Yersinia enterocolitica biogroup 1A, serotype O:5 in chicken carcasses.</obj></solution><solution><subj resource="urn:pmid:11079707"/><obj>Reduction of Campylobacter jejuni in a simulated chicken digestive tract by Lactobacilli cultures.</obj></solution><solution><subj resource="urn:pmid:11079708"/><obj>Thermal stability of moniliformin at varying temperature, pH, and time in an aqueous environment.</obj></solution><solution><subj resource="urn:pmid:11079709"/><obj>Detection and analysis of animal materials in food and feed.</obj></solution><solution><subj resource="urn:pmid:11130944"/><obj>Theoretical foundation and experimental proof of the accumulating transfer of tritium from water into DNA and other biomolecules in vitro and in vivo.</obj></solution><solution><subj resource="urn:pmid:11130945"/><obj>Distinguishing potential sources of genotoxic exposure via HPRT mutations.</obj></solution><solution><subj resource="urn:pmid:11130946"/><obj>Some aspects of the plant radioresistance.</obj></solution><solution><subj resource="urn:pmid:11130947"/><obj>Biology versus engineering: the TMI accident as a case study in problems of dosimetry.</obj></solution><solution><subj resource="urn:pmid:11130948"/><obj>Assessment of external dose to inhabitants evacuated from the 30-km zone soon after the Chernobyl accident.</obj></solution><solution><subj resource="urn:pmid:11130949"/><obj>Genomic instability, bystander effects and radiation risks: implications for development of protection strategies for man and the environment.</obj></solution><solution><subj resource="urn:pmid:11130950"/><obj>Estimation of genetic risks of exposure to ionizing radiation: status in the year 2000.</obj></solution><solution><subj resource="urn:pmid:11130951"/><obj>Exposition of humans to low doses and low dose rate irradiation: an urgent need for new markers and new models.</obj></solution><solution><subj resource="urn:pmid:11244586"/><obj>[Radiofrequency: storm looming over hepatic surgery]</obj></solution><solution><subj resource="urn:pmid:11244587"/><obj>[Curative treatment of local and regional rectal cancer recurrences]</obj></solution><solution><subj resource="urn:pmid:11244588"/><obj>[Proximal bile duct cholangiocarcinomas]</obj></solution><solution><subj resource="urn:pmid:11244589"/><obj>[Cholelithiasis in heart transplant patients]</obj></solution><solution><subj resource="urn:pmid:11244590"/><obj>[Immediate postoperative complications after a laparoscopic partial posterior fundoplication. Early laparoscopic reoperation]</obj></solution><solution><subj resource="urn:pmid:11244631"/><obj>[Emergency hormonal contraception in France in 2000]</obj></solution><solution><subj resource="urn:pmid:11244632"/><obj>[Postpartum hemorrhage: treatment by embolization]</obj></solution><solution><subj resource="urn:pmid:11244633"/><obj>[Umbilical cutaneous metastasis (or Sister Mary Joseph's nodule) disclosing an ovarian adenocarcinoma]</obj></solution><solution><subj resource="urn:pmid:11244634"/><obj>[Human papillomavirus typing in routine cervical smears. Results from a series of 3778 patients]</obj></solution><solution><subj resource="urn:pmid:11244635"/><obj>[Fetal arrhythmias: diagnosis, prognosis, treatment; apropos of 33 cases]</obj></solution><solution><subj resource="urn:pmid:11244636"/><obj>[Role of luteinizing hormone in follicular and corpus luteum physiology]</obj></solution><solution><subj resource="urn:pmid:11244637"/><obj>[Effects of hormone replacement therapy for menopause on prognostic factors of breast cancer]</obj></solution><solution><subj resource="urn:pmid:11244638"/><obj>[The First World War and venereal disease morbidity. I. The amplitude of the plague]</obj></solution><solution><subj resource="urn:pmid:11244639"/><obj>[Analogues agonists and antagonists: what is their role outside of fertilization in vitro?]</obj></solution><solution><subj resource="urn:pmid:11244640"/><obj>[Thin layer cytology of the cervix uteri]</obj></solution><solution><subj resource="urn:pmid:11244641"/><obj>[Controversy: systemic amniocentesis for women 38 years and more? Is it still lawful to recommend amniocentesis with the sole criterion being maternal age of 38 years or more?]</obj></solution><solution><subj resource="urn:pmid:11244860"/><obj>Haematology and plasma biochemistry of Stamboek pre-pubertal gilts in Italy: reference values.</obj></solution><solution><subj resource="urn:pmid:11244861"/><obj>Course of epidermal growth factor (EGF) and insulin-like growth factor I (IGF-I) in mammary secretions of the goat during end-pregnancy and early lactation.</obj></solution><solution><subj resource="urn:pmid:11244862"/><obj>Differential electrocardiographic study on Iberica and Duroc breeds of pig during physical maturation.</obj></solution><solution><subj resource="urn:pmid:11244863"/><obj>Evaluation of a transportable [Ca++] and pH analyser and of the impact of different anticoagulants and sampling sites in cattle.</obj></solution><solution><subj resource="urn:pmid:11244864"/><obj>Production of reactive oxygen species in neutrophils after repeated bouts of exercise in standardbred trotters.</obj></solution><solution><subj resource="urn:pmid:11246480"/><obj>Acceptance and digestibility of some selected browse feeds with varying tannin content as supplements in sheep nutrition in west Africa.</obj></solution><solution><subj resource="urn:pmid:11252224"/><obj>[Nikolaĭ Vladimirovich Timofeev-Resovskiĭ (1900-1981). (Essay on his life and works)]</obj></solution><solution><subj resource="urn:pmid:11252225"/><obj>The A beta 6w302 gene and molecular mechanisms of resistance to the spread of radiation-induced lymphoma in a mouse mutant, survivor-27.</obj></solution><solution><subj resource="urn:pmid:11252226"/><obj>[Study of genome instability using DNA fingerprinting of the offspring of male mice subjected to chronic low dose gamma irradiation]</obj></solution><solution><subj resource="urn:pmid:11252227"/><obj>[Independence of DNA repair after gamma irradiation and radioadaptive response in lymphocytes of patients with Bloom syndrome]</obj></solution><solution><subj resource="urn:pmid:11252228"/><obj>[Changes in the number of DNA-protein cross links in spleen lymphocytes of mice exposed to low intensity low dose gamma irradiation]</obj></solution><solution><subj resource="urn:pmid:11252229"/><obj>[Radiation mapping as one of main methods of creating high resolution maps of human and animal genomes]</obj></solution><solution><subj resource="urn:pmid:11252230"/><obj>[Increased radiosensitivity after irradiation of lymphocytes low adaptive doses]</obj></solution><solution><subj resource="urn:pmid:11252231"/><obj>[Results of and prospects for methods of determination of the frequency of mutant cells for glycophorin A and T-cell receptor loci to estimate long-term genotoxic effect of ionizing radiation]</obj></solution><solution><subj resource="urn:pmid:11252232"/><obj>[Potential relationship between mutation process induced by low doses of ionizing radiation, and positional dynamics of chromosomes in nuclei of eukaryotic cells]</obj></solution><solution><subj resource="urn:pmid:11252233"/><obj>[Genetic effects in Drosophila melanogaster induced by chronic low-dose irradiation]</obj></solution><solution><subj resource="urn:pmid:11252234"/><obj>[Results of cytogenetic studies of the consequences of the Chernobyl accident]</obj></solution><solution><subj resource="urn:pmid:11252235"/><obj>[Cytogenetic studies of blood lymphocytes of cosmonauts after long-ter, space flights]</obj></solution><solution><subj resource="urn:pmid:11252236"/><obj>[Mutagenesis in Muridae from regions with increased radiation level]</obj></solution><solution><subj resource="urn:pmid:11252237"/><obj>[Radiation-population monitoring of Pinus sylvestris L. in the zone of the Chernobyl power plant]</obj></solution><solution><subj resource="urn:pmid:11252238"/><obj>[Current problems of estimation of genetic risk of human exposure to radiation]</obj></solution><solution><subj resource="urn:pmid:11270348"/><obj>[Controversy: systemic amniocentesis for women 38 years and more? Is it not premature to no longer accept performing amniocentesis on a patient age 38 years or more?]</obj></solution></query></answer>
Property changes on: trunk/jxdata/iTQL/fulltext_queries/queryResult21.txt
___________________________________________________________________
Name: svn:keywords
+ Id HeadURL Revision
Name: svn:eol-style
+ native
Modified: trunk/jxdata/iTQL/fulltext_queries/test.jxu
===================================================================
--- trunk/jxdata/iTQL/fulltext_queries/test.jxu 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/jxdata/iTQL/fulltext_queries/test.jxu 2009-01-21 12:45:04 UTC (rev 1448)
@@ -2,6 +2,18 @@
<jxu>
<set name="debug" value="false" />
+ <!-- drop all fulltext models -->
+ <set name="query"
+ value="drop <@server@#model1> ;
+ drop <@server@#fulltext> ;
+ drop <@server@#fulltext2> ;
+ drop <@server@#normal_zh> ;
+ drop <@server@#fulltext_zh> ;
+ drop <@server@#numbers_test> ;
+ drop <@server@#numbers_fulltext> ;"/>
+
+ <eval stepClass="org.mulgara.store.jxunit.QueryJX" />
+
<!-- Create a normal model -->
<set name="modelName" value="@server@#model1" />
<set name="loadCommand" value="load <@baseuri@/jxdata/iTQL/data.rdf> into <@server@#model1> ;" />
@@ -362,6 +374,45 @@
<fail>Output failed. Check badQuery19Result.xml for output.</fail>
</ifEqual>
+ <!-- Query Lucene model with only a subject given -->
+ <set name="query"
+ value="select $pred $obj from <@server@#model1>
+ where <urn:pmid:10941736> $pred $obj in <@server@#fulltext2>
+ order by $pred $obj;"/>
+
+ <eval stepClass="org.mulgara.store.jxunit.QueryJX" />
+ <ifEqual converse="true" file="queryResult20.txt" name="queryResult">
+ <save name="queryResult" file="badQuery20Result.xml"/>
+ <fail>Output failed. Check badQuery20Result.xml for output.</fail>
+ </ifEqual>
+
+ <!-- Query Lucene model with only a predicate given -->
+ <set name="query"
+ value="select $subj $obj from <@server@#model1>
+ where $subj <http://mulgara.org/mulgara/Document#title> $obj in <@server@#fulltext2>
+ order by $subj $obj;"/>
+
+ <eval stepClass="org.mulgara.store.jxunit.QueryJX" />
+ <ifEqual converse="true" file="queryResult21.txt" name="queryResult">
+ <save name="queryResult" file="badQuery21Result.xml"/>
+ <fail>Output failed. Check badQuery21Result.xml for output.</fail>
+ </ifEqual>
+
+ <!-- Export Lucene model -->
+ <set name="query" value="export <@server@#fulltext2> to <@baseuri@/tmp/fulltext2.rdf>;"/>
+
+ <eval stepClass="org.mulgara.store.jxunit.QueryJX" />
+ <ifEqual converse="true" file="exportResult1.txt" name="queryResult">
+ <save name="queryResult" file="badExportResult1.xml"/>
+ <fail>Output failed. Check badExportResult1.xml for output.</fail>
+ </ifEqual>
+
+ <set name="exportData" file="../../../tmp/fulltext2.rdf"/>
+ <ifEqual converse="true" file="exportData1.txt" name="exportData">
+ <save name="exportData" file="badExportData1.xml"/>
+ <fail>Output failed. Check badExportData1.xml for output.</fail>
+ </ifEqual>
+
<!-- Drop the fulltext model -->
<set name="query"
value="drop <@server@#model1> ;
Modified: trunk/log4j-conf.xml
===================================================================
--- trunk/log4j-conf.xml 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/log4j-conf.xml 2009-01-21 12:45:04 UTC (rev 1448)
@@ -51,7 +51,14 @@
</appender>
<!-- (Insert category elements here) -->
+ <logger name="org.mulgara">
+ <level value="info" />
+ </logger>
+ <logger name="org.mulgara.resolver.lucene">
+ <level value="debug" />
+ </logger>
+
<!-- Default is to log messages of "warn" priority to the logfile appender -->
<root>
<priority value="warn"/>
Modified: trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndex.java
===================================================================
--- trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndex.java 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndex.java 2009-01-21 12:45:04 UTC (rev 1448)
@@ -537,25 +537,23 @@
/**
* Find a string within the fulltext string pool. The search is based on the
- * {@link StandardAnalyzer} used to add the string. Subject and predicate can
- * be supplied {null}.
+ * {@link StandardAnalyzer} used to add the string.
*
- * @param subject subject maybe null
- * @param predicate predicate maybe null
- * @param literal literal to be searched via the analyzer. Must always be
- * supplied
+ * @param subject subject; may be null
+ * @param predicate predicate; may be null
+ * @param literal literal to be searched via the analyzer; may be null
* @return Object containing the hits
* @throws FullTextStringIndexException IOException occurs on reading index
*/
public Hits find(String subject, String predicate, String literal) throws FullTextStringIndexException {
- if ((literal == null) || (literal.length() == 0)) {
- throw new FullTextStringIndexException("Literal has not been supplied a value");
- }
+ Query query;
- Hits hits = null;
- BooleanQuery bQuery = new BooleanQuery();
+ if (subject == null && predicate == null && literal == null) {
+ query = new MatchAllDocsQuery();
+ } else {
+ BooleanQuery bQuery = new BooleanQuery();
+ query = bQuery;
- try {
// debug logging
if (logger.isDebugEnabled()) {
logger.debug("Searching the fulltext string index pool with subject :" + subject +
@@ -564,33 +562,39 @@
if (subject != null) {
TermQuery tSubject = new TermQuery(new Term(SUBJECT_KEY, subject));
- tSubject.setBoost(0);
+ if (literal != null) tSubject.setBoost(0); // if scoring, don't affect the score
bQuery.add(tSubject, BooleanClause.Occur.MUST);
}
if (predicate != null) {
TermQuery tPredicate = new TermQuery(new Term(PREDICATE_KEY, predicate));
- tPredicate.setBoost(0);
+ if (literal != null) tPredicate.setBoost(0); // if scoring, don't affect the score
bQuery.add(tPredicate, BooleanClause.Occur.MUST);
}
- Query qliteral = null;
+ if (literal != null) {
+ Query qliteral = null;
- // Are we performing a reverse string lookup?
- if (enableReverseTextIndex && isLeadingWildcard(literal)) {
- literal = reverseLiteralSearch(literal);
- QueryParser parser = new QueryParser(REVERSE_LITERAL_KEY, analyzer);
- qliteral = parser.parse(literal);
- } else {
- QueryParser parser = new QueryParser(LITERAL_KEY, analyzer);
- qliteral = parser.parse(literal);
+ try {
+ // Are we performing a reverse string lookup?
+ if (enableReverseTextIndex && isLeadingWildcard(literal)) {
+ literal = reverseLiteralSearch(literal);
+ QueryParser parser = new QueryParser(REVERSE_LITERAL_KEY, analyzer);
+ qliteral = parser.parse(literal);
+ } else {
+ QueryParser parser = new QueryParser(LITERAL_KEY, analyzer);
+ qliteral = parser.parse(literal);
+ }
+ } catch (ParseException ex) {
+ logger.error("Unable to parse query '" + literal + "'", ex);
+ throw new FullTextStringIndexException("Unable to parse query '" + literal + "'", ex);
+ }
+
+ bQuery.add(qliteral, BooleanClause.Occur.MUST);
}
- // submit the literal to the boolean query
- bQuery.add(qliteral, BooleanClause.Occur.MUST);
-
// debug logging
- if (logger.isDebugEnabled()) {
+ if (literal != null && logger.isDebugEnabled()) {
if ((literal.startsWith("*") || literal.startsWith("?")) && enableReverseTextIndex) {
logger.debug("Searching the fulltext string index pool with parsed query as " +
bQuery.toString(REVERSE_LITERAL_KEY));
@@ -599,23 +603,10 @@
bQuery.toString(LITERAL_KEY));
}
}
-
- //Perform query
- indexSearcher.search(bQuery, hits = new Hits(indexSearcher.getIndexReader()));
-
- if (logger.isDebugEnabled()) {
- logger.debug("Got hits: " + hits.length());
- }
- } catch (IOException ex) {
- closeIndexers = true;
- logger.error("Unable to read results for query '" + bQuery.toString(LITERAL_KEY) + "'", ex);
- throw new FullTextStringIndexException("Unable to read results for query '" + bQuery.toString(LITERAL_KEY) + "'", ex);
- } catch (ParseException ex) {
- logger.error("Unable to parse query '" + bQuery.toString(LITERAL_KEY) + "'", ex);
- throw new FullTextStringIndexException("Unable to parse query '" + bQuery.toString(LITERAL_KEY) + "'", ex);
}
- return hits;
+ //Perform query
+ return find(query);
}
/**
@@ -645,6 +636,10 @@
//Perform query
indexSearcher.search(query, hits = new Hits(indexSearcher.getIndexReader()));
+
+ if (logger.isDebugEnabled()) {
+ logger.debug("Got hits: " + hits.length());
+ }
} catch (IOException ex) {
closeIndexers = true;
logger.error("Unable to read results for query '" + query.toString(LITERAL_KEY) + "'", ex);
Modified: trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndexTuples.java
===================================================================
--- trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndexTuples.java 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/FullTextStringIndexTuples.java 2009-01-21 12:45:04 UTC (rev 1448)
@@ -193,7 +193,8 @@
String subject = getString(subjectElement, prefix);
String predicate = getString(predicateElement, prefix);
String object = getString(objectElement, prefix);
- assert object != null : "Internal error: lucene-query string not bound";
+ assert (constraint.getScoreVar() == null || object != null) :
+ "Internal error: lucene-query string not bound even though a score is requested";
if (logger.isDebugEnabled()) {
logger.debug("Searching for " + subject + " : " + predicate + " : " + object);
@@ -254,8 +255,11 @@
public long getColumnValue(int column) throws TuplesException {
try {
if (column >= 0 && column < luceneKeyList.size()) {
- URI uri = new URI(document.get((String) luceneKeyList.get(column)));
- return session.localize(new URIReferenceImpl(uri));
+ String luceneKey = luceneKeyList.get(column);
+ if (luceneKey == FullTextStringIndex.LITERAL_KEY)
+ return session.localize(new LiteralImpl(document.get(luceneKey)));
+ else
+ return session.localize(new URIReferenceImpl(new URI(document.get(luceneKey))));
} else if (column == luceneKeyList.size()) {
// Generate the score column
return session.localize(new LiteralImpl(hits.score(nextDocumentIndex - 1)));
@@ -359,8 +363,9 @@
}
public Annotation getAnnotation(Class<?> annotationClass) throws TuplesException {
- // the object (lucene query string) is always required
- if (annotationClass.equals(MandatoryBindingAnnotation.class) && objectElement instanceof Variable) {
+ // the object (lucene query string) is required when a score is requested
+ if (annotationClass.equals(MandatoryBindingAnnotation.class) &&
+ objectElement instanceof Variable && constraint.getScoreVar() != null) {
return new MandatoryBindingAnnotation(new Variable[] { (Variable)objectElement });
}
Modified: trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverFactory.java
===================================================================
--- trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverFactory.java 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverFactory.java 2009-01-21 12:45:04 UTC (rev 1448)
@@ -141,10 +141,10 @@
/**
* {@inheritDoc}
- * @return <code>false</code> - this graph does not support exports.
+ * @return <code>true</code> - this graph supports exports.
*/
public boolean supportsExport() {
- return false;
+ return true;
}
/**
Modified: trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverUnitTest.java
===================================================================
--- trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverUnitTest.java 2009-01-21 12:44:57 UTC (rev 1447)
+++ trunk/src/jar/resolver-lucene/java/org/mulgara/resolver/lucene/LuceneResolverUnitTest.java 2009-01-21 12:45:04 UTC (rev 1448)
@@ -45,6 +45,7 @@
import org.mulgara.query.Variable;
import org.mulgara.query.operation.Modification;
import org.mulgara.query.rdf.Mulgara;
+import org.mulgara.query.rdf.LiteralImpl;
import org.mulgara.query.rdf.URIReferenceImpl;
import org.mulgara.resolver.Database;
import org.mulgara.resolver.JotmTransactionManagerFactory;
@@ -201,6 +202,36 @@
compareResults(new String[][] { { "foo:hasText" } }, answer);
answer.close();
+ // Run simple query with fixed subject and variable predicate and object
+ q = "select $p $o from <foo:bar> where <foo:node9> $p $o in <" + modelURI + ">;";
+ answer = session.query(parseQuery(q));
+ compareResults(new String[][] { { "foo:hasText", "Antibiotic Use Working Group" } }, answer, true);
+ answer.close();
+
+ // Run simple query with fixed predicate and variable subject and object
+ q = "select $s $o from <foo:bar> where $s <foo:hasText> $o in <" + modelURI + "> order by $s limit 3;";
+ answer = session.query(parseQuery(q));
+ compareResults(new String[][] {
+ { "foo:node1", "AACP Pneumothorax Consensus Group" },
+ { "foo:node10", "Atypical Squamous Cells Intraepithelial" },
+ { "foo:node11", "Lesion Triage Study (ALTS) Group" },
+ },
+ answer, true);
+
+ answer.close();
+
+ // Run simple query with variable subject, predicate, and object
+ q = "select $s $p $o from <foo:bar> where $s $p $o in <" + modelURI + "> order by $s limit 3;";
+ answer = session.query(parseQuery(q));
+ compareResults(new String[][] {
+ { "foo:node1", "foo:hasText", "AACP Pneumothorax Consensus Group" },
+ { "foo:node10", "foo:hasText", "Atypical Squamous Cells Intraepithelial" },
+ { "foo:node11", "foo:hasText", "Lesion Triage Study (ALTS) Group" },
+ },
+ answer, true);
+
+ answer.close();
+
// Run extended query with variable subject and fixed predicate
q = "select $s from <foo:bar> where $s <mulgara:search> $b in <" + modelURI + "> and $b <foo:hasText> 'American' in <" + modelURI + ">;";
answer = session.query(parseQuery(q));
@@ -840,14 +871,21 @@
}
private void compareResults(String[][] expected, Answer answer) throws Exception {
+ compareResults(expected, answer, false);
+ }
+
+ private void compareResults(String[][] expected, Answer answer, boolean lastIsLiteral)
+ throws Exception {
try {
answer.beforeFirst();
for (int i = 0; i < expected.length; i++) {
assertTrue("Answer short at row " + i, answer.next());
assertEquals(expected[i].length, answer.getNumberOfVariables());
for (int j = 0; j < expected[i].length; j++) {
- URIReferenceImpl uri = new URIReferenceImpl(new URI(expected[i][j]));
- assertEquals(uri, answer.getObject(j));
+ Object exp = (lastIsLiteral && j == expected[i].length - 1) ?
+ new LiteralImpl(expected[i][j]) :
+ new URIReferenceImpl(new URI(expected[i][j]));
+ assertEquals(exp, answer.getObject(j));
}
}
assertFalse(answer.next());
More information about the Mulgara-svn
mailing list